Image: Old C. elegans expressing a specific alternative splicing event tagged by either green or red fluorescent protein, well-fed (left) or on dietary restriction (right). Worms on dietary restriction maintain a youthful splicing pattern (as seen in young worms) compared to the well-fed worm population at the same age. Credit: Image courtesy of Harvard T.H. Chan School of Public Health
For the 1st time, a causal link between RNA splicing and aging has been revealed. The finding sheds light on the biological role of splicing in lifespan and suggests that manipulating specific splicing factors in humans might help promote healthy aging. “What kills neurons in Alzheimer’s is certainly different from what causes cardiovascular disease, but the shared underlying risk factor for these illnesses is really age itself,” said William Mair, assistant professor of genetics and complex diseases at Harvard Chan School. “So one of the big questions is: Is there a unifying theme that unfolds molecularly within various organ systems and allows these diseases to take hold?”
In order for bodies – and cells – to maintain youthfulness, they must also maintain proper homeostasis. At the cellular level, that means keeping the flow of biological information, from genes to RNA to proteins, running smoothly and with the right balance. While a considerable amount is known about how dysfunction at the two ends of this process – genes and proteins – can accelerate aging, strikingly little is known about how the middle part, which includes RNA splicing, influences aging. Splicing enables one gene to generate multiple proteins that can act in different ways and in disparate parts of the body.
“Although we know that specific splicing defects can lead to disease, we were really intrigued about de-regulation of RNA splicing as a driver of the aging process itself, because practically nothing is known about that,” said Mair. “Put simply, splicing is a way for organisms to generate complexity from a relatively limited number of genes.”
So Mair et al designed a series of experiments in the roundworm Caenorhabditis elegans to probe the potential connections between splicing and aging. “C. elegans is a great tool to study aging in because the worms only live for about 3 weeks, yet during that time they can show clear signs of age. For example, they lose muscle mass and experience declines in fertility as well as immune function. Their skin even wrinkles, too,” explained Heintz. The worms also carry about the same total number of genes as humans and many of those genes are shared, evolutionarily speaking, between the two species.
Notably, the worms’ cells are transparent, so Heintz and her colleagues harnessed fluorescent genetic tools to visualize the splicing of a single gene in real-time throughout the aging process. Not only did the scientists observe variability on a population level – after 5 days, some worms showed a youthful pattern of splicing while others exhibited one indicative of premature aging – but they could also use these differences in splicing (reflected fluorescently) to predict individual worms’ lifespans prior to any overt signs of old age. “This is a really interesting result, and suggests that we might someday be able to use splicing as a kind of biomarker or early signature of aging,” said Heintz.
Interestingly, when the team looked at worms treated in ways that increase lifespan (through dietary restriction), they found that the youthful splicing pattern was maintained throughout the worms’ lives. Importantly, the phenomenon is not restricted to just one gene, but affects genes across the C. elegans genome. The finding suggests that splicing could play a broad role in the aging process, both in worms as well as humans.
As they dug more deeply into the molecular links between splicing and aging, Heintz and her colleagues zeroed in on one particular component of the splicing apparatus in worms, called splicing factor 1 (SFA-1) – a factor also present in humans. In a series of experiments, they demonstrate that this factor plays a key role in pathways related to aging. Remarkably, when SFA-1 is present at abnormally high levels, it is sufficient on its own to extend lifespan.
“These are fascinating results, and suggest that variability in RNA splicing might be one of the smoking guns of the aging process,” said Mair. “Of course, we have much more to learn, but this study opens up an entirely new avenue of investigation that could help us understand how to not only live longer, but also healthier.” https://www.hsph.harvard.edu/news/press-releases/uncovering-smoking-gun-in-age-related-disease/
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