A hydrogen bond forms between a propellane (lower molecule) and the carbon monoxide functionalized tip of an atomic force microscope. The measured forces and the distance between the oxygen atom at the AFM tip and the propellane’s hydrogen atoms correspond precisely to the calculations. Credit: University of Basel, Department of Physics
Scientists have succeeded in studying the strength of hydrogen bonds in a single molecule using an atomic force microscope, AFM. Hydrogen is the most common element in the universe and is an integral part of almost all organic compounds. H-bonds are responsible for specific properties of proteins or nucleic acids and, for example, also ensure that water has a high boiling temperature. To date, it has not been possible to conduct a spectroscopic or electron microscopic analysis of hydrogen and the hydrogen bonds in single molecules, and investigations using atomic force microscopy have also not yielded any clear results.
Dr. Shigeki Kawai, from Professor Ernst Meyer’s team at the Swiss Nanoscience Institute and the Department of Physics at the University of Basel, has now succeeded in using a high-resolution atomic force microscope to study hydrogen atoms in individual cyclic hydrocarbon compounds. They selected compounds whose configuration resembles that of a propeller. These propellanes arrange themselves on a surface in such a way that 2 hydrogen atoms always point upwards. If the tip of the atomic force microscope, which is functionalized with CO, is brought close enough to these hydrogen atoms, hydrogen bonds are formed that can then be examined.
Hydrogen bonds are much weaker than chemical bonds, but stronger than intermolecular van der Waals interactions. The measured forces and distances between the oxygen atoms at the tip of the atomic force microscope and the propellane’s hydrogen atoms correspond very well to the calculations performed by Prof. Adam S. Foster, Aalto University in Finland. They show that the interaction clearly involves hydrogen bonds. The measurements mean that the much weaker van der Waals forces and the stronger ionic bonds can be excluded.
With this study, the researchers have opened up new ways to identify 3D molecules such as nucleic acids or polymers via observation of hydrogen atoms.
https://www.eurekalert.org/pub_releases/2017-05/uob-hbd051117.php http://advances.sciencemag.org/content/3/5/e1603258
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